Ning An, LiuqiJin, Jiaoyun Yang*, Yue Yin, Siyuan Jiang, Bo Jing,Rhoda Au, Data Platform for the Research and Prevention of Alzheimer’s Disease, Healthcare and Big Data Management, Springer, 2017.
 Jiaoyun Yang, Song Yu, Bowen Gong, Ning An, Gil Alterovitz, Biobrick Chain Recommendations for Genetic Circuit Design, Computers in Biology and Medicine, 86:31-39 (2017).
 Jiaoyun Yang, Haipeng Wang, Huitong Ding, Ning An, Gil Alterovitz, Nonlinear Dimensionality Reduction Methods for Synthetic Biology Biobricks' Visualization, BMC Bioinformatics, 18(1): 47 (2017).
 Haoyu Cheng, Huaipan Jiang, Jiaoyun Yang, Yun Xu, and Yi Shang. BitMapper: an efficient all-mapper based on bit-vector computing. BMC bioinformatics 16, no. 1 (2015): 1.
 Jiaoyun Yang, Yun Xu, Yi Shang and Guoliang Chen, A Space-Bounded Anytime Algorithm for the Multiple Longest Common Subsequence Problem, IEEE Transactions on Knowledge and Data Engineering, 26.11 (2014): 2599-2609.
 Jiaoyun Yang, Yun Xu, Guangzhong Sun, and Yi Shang, A New Progressive Algorithm for Multiple Longest Common Subsequences Problem and Its Efficient Parallelization, IEEE Transactions on Parallel and Distributed Systems, Vol. 24, No. 5, pp. 862-870, 2013.
 Jiaoyun Yang, Yun Xu, Xiaohui Yao, and Guoliang Chen, FNphasing: A Novel Fast Heuristic Algorithm for Haplotype Phasing Based on Flow Network Model, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 10, No. 2, pp. 372-382, 2013.
 Yun Xu, Jiaoyun Yang, Yuzhong Zhao and Yi Shang, An improved voting algorithm for planted (l,d) motif search, Information Sciences. Vol. 237, pp. 305-312, 2013.